PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000758053
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 329aa    MW: 35339.5 Da    PI: 8.9312
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000758053genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding452.6e-1496140347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky
    MDP0000758053  96 AWTEEEHKLFLVGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 140
                      7*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.631520IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129416.64489145IPR017930Myb domain
SuperFamilySSF466896.5E-1791146IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-1692143IPR006447Myb domain, plants
SMARTSM007175.9E-1093143IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-1095140IPR009057Homeodomain-like
CDDcd001674.61E-996141No hitNo description
PfamPF002491.5E-1196140IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0046686Biological Processresponse to cadmium ion
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MSRTCSQCGN NGHNSRTCTD ASGGVGGGAT ASAENGIMLF GVRVTEANAF RKSASMNNLS  60
QYEQHLQADS NADAGYASDD VVHASGHRRE RKRGVAWTEE EHKLFLVGLQ KVGKGDWRGI  120
SRNFVKTRTP TQVASHAQKY FLRRNNHNRR RRRSSLFDIT TDTPLNSLME EDLGESSPTV  180
VPVLPFPPQP ESNLGCNFLG GFPVSTFPVA FSPAALPGEG SPTESKLTSL GLNMKSLEDM  240
QQQSQTKVAQ TTTELIRPIP LHPPVVPPSK MAGLNLNKTY SSSPTRDPLP LSLKLSTTPS  300
EEQSPTTPSH SSAFQAMSSG SDSVISVA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.158010.0fruit| leaf| root| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00630PBMTransfer from PK17526.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008339970.10.0PREDICTED: transcription factor MYB1R1
TrEMBLD9ZJ790.0D9ZJ79_MALDO; MYBR domain class transcription factor
STRINGVIT_01s0026g01050.t011e-104(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53383350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70000.21e-75MYB_related family protein